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Welcome to the
Human
KZNF Gene Catalog
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@UCSC (added track)
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Model Data
Motif Data
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Microarray Probes
Genomic Sequence Retrieval Request
Model chosen:
LLNL ID
Type
Confidence
Coordinates
Protein Motifs
4447
Gene
Some Reservations
chr19:57066186-57082985
A-B-8F
FASTA Header Options:
Default, e.g. >ZNF273|1422|LLNL452|chr7:63807816-63835487(+)
Customize
Enter your own format using the available variables (shown below).
For example,
>
[locus]
|llnlLocusId=
[locusId]
--coordinates are:
[coords]
Would produce a header like:
>ZNF225|llnlLocusId=250--coordinates are: chr19:49309381-49330809(+)
Locus-related variables:
[locus]
: locus name
[locusId]
: internal LLNL locus id
[locusType]
: LLNL-designated locus type, e.g. Known, Novel, Putative, Pseudogene, etc.
[locusCoords]
: locus coordinates (positions are 1-based), e.g. chr19:49309381-49330809(+)
Model-related variables (not available for motif retrievals):
[modelId]
: internal LLNL model id
[modelType]
: LLNL-designated model type, i.e. Gene or Pseudogene
[modelProtMotifs]
: motifs present in model's predicted protein sequence
[modelGenomicMotifs]
: all motifs in genomic sequence
[modelGenomicMotifsNoStops]
: motifs without predicted stop codons in genomic sequence
[fingerCount]
: count of fingers completely translated in frame
[fingerCountGenomic]
: count of fingers found in genomic sequence including degenerate fingers with stop codons
Motif-related variables (only available for motif retrievals):
[motifType]
: motif type, e.g. KRAB-A
Genomic postion variables (all positions are 1-based):
[coords]
: model/motif coordinates, e.g. chr19:49309381-49330809(+)
[chr]
: chromosome, e.g. chr19
[chrShort]
: abbreviated chromosome name, e.g. 19
[low]
: low coordinate of model/motif, e.g. 49309381
[lowMb]
: low coordinate of model/motif in megabases (rounded to nearest hundredth), e.g. 49.31
[high]
: high coordinate of model/motif, e.g. 49330809
[strand]
: + or -
Other:
[retrievalOptions]
: options selected during retrieval
>[locus]|[modelId]|LLNL[locusId]|[coords]
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Institute for Genomic Biology
University of Illinois at Urbana Champaign
1206 W. Gregory Dr. Urbana, IL 61801