UCSC-style options:
    Include upstream  bases from model
    5' UTR
    Coding sequence
    3' UTR
    Introns
    Include downstream  bases from model

Note: Upstream/downstream sequence requests extending "off" the chromosome will be silently truncated.
Note: To retrieve predicted mRNA sequences, select: 5' UTR, Coding sequence, and 3' UTR.

Catalog options:
    Include upstream  bases from region
     Finger region
     Tether region
     Intron preceeding finger region
     By motif (separate record per motif)
    Exclude region/motif sequence (upstream/downstream only)
    Include downstream  bases from region

Note: Upstream/downstream sequence requests extending "off" the chromosome will be silently truncated.

Enter your own format using the available variables (shown below).

For example,
   >[locus]|llnlLocusId=[locusId]--coordinates are: [coords]
Would produce a header like:
   >ZNF225|llnlLocusId=250--coordinates are: chr19:49309381-49330809(+)

Locus-related variables:
[locus]: locus name
[locusId]: internal LLNL locus id
[locusType]: LLNL-designated locus type, e.g. Known, Novel, Putative, Pseudogene, etc.
[locusCoords]: locus coordinates (positions are 1-based), e.g. chr19:49309381-49330809(+)

Model-related variables (not available for motif retrievals):
[modelId]: internal LLNL model id
[modelType]: LLNL-designated model type, i.e. Gene or Pseudogene
[modelProtMotifs]: motifs present in model's predicted protein sequence
[modelGenomicMotifs]: all motifs in genomic sequence
[modelGenomicMotifsNoStops]: motifs without predicted stop codons in genomic sequence
[fingerCount]: count of fingers completely translated in frame
[fingerCountGenomic]: count of fingers found in genomic sequence including degenerate fingers with stop codons

Motif-related variables (only available for motif retrievals):
[motifType]: motif type, e.g. KRAB-A

Genomic postion variables (all positions are 1-based):
[coords]: model/motif coordinates, e.g. chr19:49309381-49330809(+)
[chr]: chromosome, e.g. chr19
[chrShort]: abbreviated chromosome name, e.g. 19
[low]: low coordinate of model/motif, e.g. 49309381
[lowMb]: low coordinate of model/motif in megabases (rounded to nearest hundredth), e.g. 49.31
[high]: high coordinate of model/motif, e.g. 49330809
[strand]: + or -

Other:
[retrievalOptions]: options selected during retrieval

>[locus]|[modelId]|LLNL[locusId]|[coords]