The KZNF catalog
A comprehensive collection of Krüppel-type zinc finger genes (KZNFs) in primates with finished or high quality draft genomes
- Catalogs
- Human HG18
- Human HG17
- Chimpanzee
- GBrowse
- Human
- Chimpanzee
- Orangutan
- Rhesus macaque
- Orthologs
- Synteny Browser
- Tables
- Batch retrieval
- Downloads
- HG18 Bed
- Chimpanzee Bed
- Citation
- The Primate KZNF Catalog
- The human KZNF catalog
Catalogs
- Manually curated gene and pseudogene models for human HG17, HG181 and PanTro2
- Information on motif composition
- Allow queries based on name, motif composition, coordinates
- Links to UCSC genome browser
- Sequence retrieval for selected loci
1 models of HG17 lifted over to HG18, manual curation of collapsed loci
Gbrowse
- Genome browser of KZNF and UCSC gene and pseudogene models for hg18, panTro2, ponAbe22, and rheMac22 assemblies
- Tracks include:
- Full and representative KZNF gene models
- UCSC gene models from the UCSC Genome Browser
- KZNF motifs
2 models are derived semi-manually based on motif proximity, splice junctions might be incorrect
Orthologs
- Synteny browser with species comparisons of orthologous loci
- Tables provide information on ortholog presence and locus names for each orthogroup
- High confidence: supported by OrthoMCL, reciprocal best BLAST hit, and synteny
- All: includes high confidence set plus manually identified orthologs supported by at least OrthoMCL, reciprocal best BLAST hit, or synteny
Batch retrieval
- Retrieval of locus information for all models in FASTA, GFF3, or BED format